SE3830076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8394
  • Solanum tuberosum
  • SE3830076
  • hAT
  • Hat3
  • chr01:89727296-89727497
  • GATGTTAT
  • GATGTTATCAGTGGCGGAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
        AT   T       C   AATTTTTAA           AAATTTGAGAAGTAAACACA      A  G AAGGGGGTTCGACATCTATTATACATACCTAAAAAAT
  GATGTT  CAG GGCGGAG CAG         TAAGGGGTTCA                    CGAACT GT G                                     
  ||||||  ||| ||||||| |||         |||||||||||                    |||||| || |                                     A
  TTGTAG  GTC CCGCCTC GTC         ATTCCCCAAGT                    GCTTGG GG G                                     
TA      --   C       C   -GTATATGG           ------------------AG      -  - AGACGCCTTTTATAATGATAAATATGTACCAATTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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