SE3820077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8395
  • Solanum tuberosum
  • SE3820077
  • Mutator
  • M27
  • PGSC0003DMB000001106:27283-27845
  • TTTCTTAAA
  • GAGAAAATGATCAAAATGATCCTTGATGTATTAGGTTGCTTTATTTTGGTCCTTAATATATTTTAGGTGATTGAAATAGTTCTTCATATATGACAAAATGTGTTCAATTTAGTCTTTTACCCTAAAACTTAACAATTTACCCCCAAAAACTGTTAAATATAACTGTGGGGCCCACATAACTTACAAAATCCACCATTTTTGCCATCTTTATTAGCTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTTAAAT                  A             A                                                      A                               C                                 T                                                                  GAA  AGTTTCATGAATTCTAAAACACCATTTTCTCTATCATCTAACTACAC
          GAGAAAATGATCAAAATG TCCTTGATGTATT GGTTGCTTTATTTTGGTCCTTAATATATTTTAGGTGATTGAAATAGTTCTTCAT TATGACAAAATGTGTTCAATTTAGTCTTTTA CCTAAAACTTAACAATTTACCCCCAAAAACTGT AAATATAACTGTGGGGCCCACATAACTTACAAAATCCACCATTTTTGCCATCTTTATTAGCTCAAA   AG                                               
          |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||                                               A
          CTCTTTTACTAGTTTTAT AGGAACTACATAA CCAATGAAATAAAACCAGGAATTATATAAGATCTACTAACTTTATCAGGAAGTA ATACTGTTTTACACAAGTTAAATCAGAAAAT GGATTTTGAATTGTTAAATGGGGGTTTTTGATA TTTATATTGACACCCCGGGTGTATTGAATGTTTTAGGTGGTAAGAATGGTAGAAATAATCGAGTTT   AG                                               
TAAATTCTTT                  C             C                                                      C                               A                                 T                                                                  --A  AACTGCTAGGTAAAGTAAGTTGGAAAAATATTATTAATAAAACATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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