Plant MITE

SE3820078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8396
Solanum tuberosum
SE3820078
Mutator
M8
chr03:35218780-35219104
TGTAAATAG
AGGCATAATACATAAATATACCTTTTAACTTGGCTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TGTAAAT                 ATA                  AATCACA      C           A              GA                           A        CAT              CC     ----      TTTTTTA
       AGGCATAATACATAAAT   CCTTTTAACTTGGCTTCA       TTTATG CCTTCAACTTT GGTGTGCACAAGTA  CACTTAAATTTGTATAAAGTTGAACAA TAGACACA   GTCCTACATGGCAT  TACAT    GGCATT       
       |||||||||||||||||   ||||||||||||||||||       |||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| ||||||||   ||||||||||||||  |||||    ||||||       T
       TCCGTATTATGTATTTA   GGGAAATTGAACTGAAGT       AAATAC GGAAGTTGAAA CCATATGTGTTTAT  GTGGATTTGAACATATTTCAACTTGTT ATCTGTGT   CAGGATGTACCGTG  ATGTG    CTGTGG       
TAAATGT                 CAC                  AAAATAC      A           C              AC                           G        ACT              TT     TATC      TGCATCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820078

TGTAAATAGGCATAATACATAAATATACCTTTTAACTTGGCTTCAAATCACATTTATGCCCTTCAACTTTAGGTGTGCACAAGTAGACACTTAAATTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGGCATCCTACATGGCATTTTTTTTATCCTACGTGGTGTCCTATGTGTATTGTGCCATGTAGGACTCATGTGTCTAGTTGTTCAACTTTATACAAGTTTAGGTGCATATTTGTGTATACCCAAAGTTGAAGGACATAAACATAAAATGAAGTCAAGTTAAAGGGCACATTTATGTATTATGCCTTGTAAAT

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