Plant MITE

SE3810079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8397
Solanum tuberosum
SE3810079
Tc1/Mariner
St5
chr06:2708507-2708757
TA
TACTCCCTCCGTTTCAATTTGTTTGTCT

Secondary structure and sequence

TSD TIR

5'

3'

                     TTT    TAATTTC    -   ---- TCTGTTTAAAAAGAATGTTTCTTTCCTTTCTTGACAACTCTTTAATTTCAATTTTCCACGTGACATTTTTAAGACCACAAGAT
TACTCCCTCCGTTTCAATTTG   GTCT       CTTT TTA    G                                                                                   
|||||||||||||||||||||   ||||       |||| |||    |                                                                                    
ATGAGGGAGGTAAAGTTAAAC   CAGA       CAAA CTG    G                                                                                   
                     TAT    ------C    A   AACT TGTTTTAAATTGTTTCATTTCTTCTGAAAACTTAGAACACCAGCATTTGATTTCTATGCAACTTACATGGTTTTACAGTAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810079

TACTCCCTCCGTTTCAATTTGTTTGTCTTAATTTCCTTTTTAGTCTGTTTAAAAAGAATGTTTCTTTCCTTTCTTGACAACTCTTTAATTTCAATTTTCCACGTGACATTTTTAAGACCACAAGATTAAATGACATTTTGGTACATTCAACGTATCTTTAGTTTACGACCACAAGATTCAAAAGTCTTCTTTACTTTGTTAAATTTTGTGTCAAGTCAAAACCAGACTATCAAATTGAAATGGAGGGAGTA

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