SE3850080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8398
  • Solanum tuberosum
  • SE3850080
  • PIF/harbinger
  • To2
  • chr03:37954875-37955182
  • TAA
  • AGAGCCCGTTTGGATTGGCTTAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                          TT        CTACTTTTTAAGTCAGTTTTTTGACTTCTGAAAGTGTTTGACAAATATAAAAAATAACTTAAAATAAGTCAAAAATGACTAAAAATAAGTTACGAAGTGTTTGACAGGTTAAAAAA
  AGAGCCCGTTTGGATTGGCTTAAAAG  GATCAAAC                                                                                                                    
  ||||||||||||||||||||||||||  ||||||||                                                                                                                     
  TCTCGGGCAAACCTAACTGAATTTTT  AACGAAAA                                                                                                                    
AA                          TT        TTTAATTTTTATGTTTTAGTTTGACTTTACTGAAAATTTAATTTTTTATTTTTCATCCCCTCTGGATAAAAACCAAAGACTAAATAAAATTCAGTAAAAAATAAATAAAATTCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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