SE3820081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8399
  • Solanum tuberosum
  • SE3820081
  • Mutator
  • M11
  • chr12:27357643-27357970
  • TATAGAATA
  • TAGGGATAAGGCACAAGTACCCCCCTAGACTATGACCGAAATACTAGAGACACACTTTAACTAATCTAAGGTCCTATTACCCCCTCCTGAACTTTTTTTTTTATAATTTTGTACATCTTTTGTCTTACGTGGCACACTCCGTGACTCCACGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAGAA      T    C                              AC                    T                 CC         --         A         A   -C     T     G     CAC    --TGA    -    AATT
       TAGGGA AAGG ACAAGTACCCCCCTAGACTATGACCGAAAT  TAGAGACACACTTTAACTAA CTAAGGTCCTATTACCC  TCCTGAACT  TTTTTTTTT TAATTTTGT CAT  TTTTG CTTAC TGGCA   TCCG     CTCC ACGC    
       |||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||  |||||||||  ||||||||| ||||||||| |||  ||||| ||||| |||||   ||||     |||| ||||    G
       ATCCCT TTCC TGTTCATGGGGGGATCTGATACTGGCTTTA  GTTTCTGTGTGGAATTGATT GATTCCAGGATAATGGG  AGGACTTGG  AAAAAAAAA ATTAAAACA GTG  AAAAC GAATG ACCGT   AGGT     GAGG TGCG    
ATAAGAG      T    A                              GA                    T                 --         GT         C         C   AA     C     A     ---    TTATA    G    CGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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