Plant MITE

SE3810083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8401
Solanum tuberosum
SE3810083
Tc1/Mariner
St4
chr08:37601781-37602043
TA
TACTCCCTCCGTCCACTTTTAATTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

                              TTTTT      TT        ACGATAAGAAC        ---    TTTACGATGTATTTTTTCATCATATTGATATGCAAAAATTGCAATTTATTGTACTTTTCGTA
TACTCCCTCCGTCCACTTTTAATTGTCATG     CTTTTC  AGAGTCAA           TTTGACTA   ACAT                                                              
||||||||||||||||||||||||||||||     ||||||  ||||||||           ||||||||   ||||                                                               
ATGAGGGAGGCAGGTGAAAATTAACAGTAC     GAAAAG  TTTCAGTT           AAACTGAT   AAGT                                                              
                              TACGT      -T        -----------        AAA    TTCACTTTAATTTAATATAGTTAAGTTATAAAATTTGTTTTTTAAATCTATAAGTTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810083

TACTCCCTCCGTCCACTTTTAATTGTCATGTTTTTCTTTTCTTAGAGTCAAACGATAAGAACTTTGACTAACATTTTACGATGTATTTTTTCATCATATTGATATGCAAAAATTGCAATTTATTGTACTTTTCGTATTTTTTTTGAATATCTAAATTTTTTGTTTAAAATATTGAATTGATATAATTTAATTTCACTTTGAAAAATAGTCAAATTGACTTTTGAAAAGTGCATCATGACAATTAAAAGTGGACGGAGGGAGTA

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