Plant MITE

SE3820085

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8403
Solanum tuberosum
SE3820085
Mutator
M8
chr05:11781103-11781428
TAAATAGTA
TAGGCATAATACATAAACATGACCCTTAATTTAGCATCATCTGGCAATTATGACCTTTAACTTTGGGTATGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATG

Secondary structure and sequence

TSD TIR

5'

3'

TAAATAG                        C       A  A   T T          A               A           A                           A         TC   C      -ATACCTT       AAATTTGTGTC
       TAGGCATAATACATAAACATGACC TTAATTT GC TCA C GGCAATTATG CCTTTAACTTTGGGT TGCACAAGTAG CACTTAAACTTGTATAAAATTGAACAA TAGACACAT  GTC TACATG        ACATGAA           
       |||||||||||||||||||||||| ||||||| || ||| | |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||  ||| ||||||        |||||||           C
       ATCCGTATTATGTATTTGTATTGG AATTGAA CG AGT G CTGTTAATAC GGAGGTTGAAACTCA ACGTGTTTATC GTGAATTTGAACATATTTTAACTTGTT ATCTGTGTG  CAG ATGTAC        GTACATC           
ATGATAA                        T       C  A   T C          G               C           C                           C         TA   A      CGTATTAT       CTGCGATGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820085

TAAATAGTAGGCATAATACATAAACATGACCCTTAATTTAGCATCATCTGGCAATTATGACCTTTAACTTTGGGTATGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATGATACCTTACATGAAAAATTTGTGTCCTATGTAGCGTCCTACATGTATTATGCCATGTAAGACATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTGCCTATTTGTGCACACTCAAAGTTGGAGGGCATAATTGTCCGTTGAAGCCAAGTTAATGGTTATGTTTATGTATTATGCCTAAATAGTA

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