SE3820086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8404
  • Solanum tuberosum
  • SE3820086
  • Mutator
  • M2
  • chr03:21544923-21545260
  • ATAAATTAA
  • TAAATTAAGGGCAAATTACATAAATCACATACTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
A   A   A   C        T     A A       A  --GTAAA     AAT          A      -    -TTACA           ---AA     ACAATAATATAAGCGCTGATACATTAATCTGATGCGCGAGATACATTAATCGTTAAGTAAGATACATTAC
 TAA TTA GGG AAATTACA AAATC C TACTTTT AG       ATTAC   TTATCCCTTA AAGTTT ATAA      GAAATCCCTCA     CGGAT                                                                      
 ||| ||| ||| |||||||| ||||| | ||||||| ||       |||||   |||||||||| |||||| ||||      |||||||||||     |||||                                                                       
 ATT AAT CCT TTTAATGT TTTAG G GTGGAAA TC       TAATG   AATAGGGGAT TTCAAA TGTT      TTTTAGGGAGT     CACGT                                                                      
A   A   A   T        C     - -       A  AAATGAA     -GT          A      A    TAGAGG           AAAAG     AGTCTAATCACATAGAGCGTGTAGTCTAATCACATAGAGCGCGTAGTCTAATCACATAGTACATATTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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