SE3830087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8405
  • Solanum tuberosum
  • SE3830087
  • hAT
  • Hat3
  • chr08:36388673-36388876
  • CAAGTAGA
  • CAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGTAGA              GGATTTT    -AA        AAAT     AAAATAGACACACGAAGTAGCCGAAGGGGGTTCGACATCTACTATATATACC
        CAGTGGCGGAGCCA       CAAT   GGGGTTCA    CTGAA                                                    
        ||||||||||||||       ||||   ||||||||    |||||                                                     
        GTCACCGCCTCGGT       GTTA   CCCCAGGT    GGCTT                                                    
AGATGAAC              --GGAAT    AAC        ---A     GGAGGAAGCTGACTTTTAATATACTAAATATGTACCAATTTTATTAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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