Plant MITE

SE3830100

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8418
Solanum tuberosum
SE3830100
hAT
Hat19
chr03:22708855-22708991
CAAACTTC
CTAAGTTGCTCGGACTCTCCAAAAATGTTGCCG

Secondary structure and sequence

TSD TIR

5'

3'

CAAACTTC   A              C           C  CACCG                     C
        CTA GTTGCTCGGACTCT CAAAAATGTTG CG     GTGTCGGATCCTTCAAAAATA 
        ||| |||||||||||||| ||||||||||| ||     ||||||||||||||||||||| A
        GAT CAACGAGCCTGAGA GTTTTTACAGC GC     CACAGCCTAGGAGGTTTTTAT 
CTTCAAAC   A              A           T  CCACG                     A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3830100

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3830100