SE3830103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8421
  • Solanum tuberosum
  • SE3830103
  • hAT
  • Hat19
  • chr06:30059471-30059607
  • CTATTGGT
  • CTATTGGTCTATGTTGCTCGGACTCTTCAAAAATGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    T   T   T     T           ---AAA     AAGAG  G            G         G
 CTA TGG CTA GTTGC CGGACTCTTCA      ATGTC     GT CGTGTCGGATTC CCAAAAGTA 
 ||| ||| ||| ||||| |||||||||||      |||||     || |||||||||||| ||||||||| T
 GGT ATC GAT CAACG GCCTGAGAAGT      TACGG     TG GCACAGCCTAAG GGTTTTTAT 
T   T   -   T     C           GAAAGC     ---CG  G            A         G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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