SE3830104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8422
  • Solanum tuberosum
  • SE3830104
  • hAT
  • Hat3
  • chr01:89067399-89067606
  • GTATCAGG
  • GGCAGGGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATCA G   G          CCTT  ACT    -  GTTCATCCGAACCCCCTTTGGCGGAAAATTATATTAATTATACATGGTTAAAATAATTTTTTATGTATA
      G CAG GGCGGAGCCA    GT   AAGG GG                                                                     
      | ||| ||||||||||    ||   |||| ||                                                                     T
      T GTC CCGCCTCGGT    CT   AAAA TT                                                                     
GGACTA G   A          ---C  ---    G  ATTCTCCTCCCAAGTTTTAGACATCTTTATCTGTGTGCTTCATCGGCTTCCCCCAAGCTGTAGATGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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