Plant MITE

SE3830106

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8424
Solanum tuberosum
SE3830106
hAT
Hat3
chr09:40725502-40725704
GCACCAGG
GGCAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

GCACCA G              GGATTTT    A     T   AAA    AAAAAATAGACACACGAAGTAGCCGAAGGGGGTTCGACATCTACAATATATAC
      G CAGTGGCGGAGCCA       CAGT AGGGG TCA   TCTA                                                     
      | ||||||||||||||       |||| ||||| |||   ||||                                                      
      C GTCACCGCCTCGGT       GTTA TCCCC AGT   GCTT                                                     
GGACCA G              --GGAAT    C     C   -AG    GGGGGAAGCCGCCTTTTAATATACTAAATATGTACTAATTTTATTAAAAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830106

GCACCAGGCAGTGGCGGAGCCAGGATTTTCAGTAAGGGGTTCAAAATCTAAAAAAATAGACACACGAAGTAGCCGAAGGGGGTTCGACATCTACAATATATACCTAAAAAATTATTTTAATCATGTATAAATCATATAATTTTCCGCCGAAGGGGGTTCGGATGACCCCCTCATTGTAAGGTGGCTCCGCCACTGGCACCAGG

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