Plant MITE

SE3820109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8427
Solanum tuberosum
SE3820109
Mutator
M8
chr07:49150505-49150818
GAAGAATTA
GGCATAATACATAAACATGATCCTTAATTTGGCGTCAGCCGGCAACTATGACCTTTAACTTTGAACGTGCACAAGTAGACATTAAAATTTGTATAAAATTGAACAAATAGACACATCCTTCCTACATGGCACCCTACATG

Secondary structure and sequence

TSD TIR

5'

3'

GAAGAATTA                                 G   GC   -        A             AC                 A                   C  A         CCT            CCC      GAAAATTT
         GGCATAATACATAAACATGATCCTTAATTTGGC TCA  CGG CAACTATG CCTTTAACTTTGA  GTGCACAAGTAGACATT AAATTTGTATAAAATTGAA AA TAGACACAT   TCCTACATGGCA   TACATG        
         ||||||||||||||||||||||||||||||||| |||  ||| |||||||| |||||||||||||  ||||||||||||||||| ||||||||||||||||||| || |||||||||   ||||||||||||   ||||||         
         CCGTATTATGTATTTGTGCTGGGAATTGAACCG AGT  GCC GTTGATAC GGAGGTTGAAACT  TACGTGTTCATCTGTGA TTTGAACATATTTTAACTT TT ATCTGTGTG   AGGATGTACTGT   ATGTAC        
ATTAAGAAG                                 A   -A   T        A             CA                 A                   A  C         CAC            ATT      ATCCTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820109

GAAGAATTAGGCATAATACATAAACATGATCCTTAATTTGGCGTCAGCCGGCAACTATGACCTTTAACTTTGAACGTGCACAAGTAGACATTAAAATTTGTATAAAATTGAACAAATAGACACATCCTTCCTACATGGCACCCTACATGGAAAATTTGTGTCCTACATGTATTATGTCATGTAGGACACGTGTGTCTACTTATTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGATGAAGCCAAGTTAAGGGTCGTGTTTATGTATTATGCCGAAGAATTA

Copy Cancel