Plant MITE

SE3810116

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8434
Solanum tuberosum
SE3810116
Tc1/Mariner
St2
chr03:22935919-22936163
TA
TACTCCCTCCGTCCCATTTTATGTGATGTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C      T          G  G   --------  -   GGCACGGAGTTTAAGAAAGAAAGGAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAAATTTTGTGTGGCTGT
TACTCCCTC GTCCCA TTTATGTGAT TA TTT        GA CTC                                                                               
||||||||| |||||| |||||||||| || |||        || |||                                                                                
ATGAGGGAG CAGGGT AAATATACTG GT AAA        CA TCA                                                                               
         A      T          A  G   GGAAAAAT  G   GGGTTTTTCTTACTGTGTAAAGATATAAATCATTGTTAAATTGATATTTTACAGATAAAATGGGAATTACTTTACTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810116

TACTCCCTCCGTCCCATTTTATGTGATGTAGTTTGACTCGGCACGGAGTTTAAGAAAGAAAGGAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAAATTTTGTGTGGCTGTAAATCATTTCATTAAGGGTAAAATAGACATTTTATAGTTAAATTGTTACTAAATATAGAAATGTGTCATTCTTTTTGGGACTGACTAAAAAGGAAAGTGAGTCATATAAATTGGGACAGAGGGAGTA

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