SE3810117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8435
  • Solanum tuberosum
  • SE3810117
  • Tc1/Mariner
  • St13
  • chr04:1719431-1719682
  • TA
  • TACTCCTTCCGTTTCACAAAGAATGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                             --G       T GGCACGGAGTTTAAGTAAATAAAGAAGACTTTTGAATCTTGTGGTCCTAAATTAAAGTTATGTCAAATGTACAAAATTGCCCTTAA
TACTCCTTCCGTTTCACAAAGAATGACCT   ATTTGAC T                                                                                      
|||||||||||||||||||||||||||||   ||||||| |                                                                                      T
ATGAGGGAGGCAAAGTGTTTCTTACTGGA   AAGAAAA A                                                                                      
                             GGA       - ATCAGTCAAAGTTTTTCTTACTGGAGAAAGGAAAAAACCATTGTAAAATGAAAAACGAAAGGTGCACCGTACAAATTCTAGTGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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