Plant MITE

SE3810118

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8436
Solanum tuberosum
SE3810118
Tc1/Mariner
St13
chr04:22252105-22252357
TA
TACTCCCTCCGTTTCAAAAAGAATGACCTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

              C          A        GAC       GGAGTTTAAAAAAAGATAGAAGACGTCTTAATCTTGTGGTTCTAAATTAAAGTTATATCAAATGTACCAAAATGTCCTTTAAT
TACTCCCTCCGTTT AAAAAGAATG CCTAGTTT   TTGGAAC                                                                                   
|||||||||||||| |||||||||| ||||||||   |||||||                                                                                   C
ATGAGGGAGGCAAA TTTTTCTTAC GGATCAAA   GAAAAAT                                                                                   
              T          C        --G       CAGACAAAGTTTTTCTTACTGGGAAAAGGAAAAAAACGTTGTGAAATTGAAGTTGAAAGATGTACCATACAAATTCCGGTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810118

TACTCCCTCCGTTTCAAAAAGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAAGATAGAAGACGTCTTAATCTTGTGGTTCTAAATTAAAGTTATATCAAATGTACCAAAATGTCCTTTAATCTTGTGGCCTTAAACATACCATGTAGAAAGTTGAAGTTAAAGTGTTGCAAAAAAAGGAAAAGGGTCATTCTTTTTGAAACAGACTAAAAAGGAAACTAGGCCATTCTTTTTTAAACGGAGGGAGTA

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