SE3830119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8437
  • Solanum tuberosum
  • SE3830119
  • hAT
  • Hat22
  • chr09:13649082-13649590
  • GTCCTATA
  • CAGTGTTTTTAAAAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCTATA         T   AA  --TTTT           CCAGG   -   CT             ACCAAAAACGCTCTGGGGCGTAATTAAAGACGTAGATCCATAAGGCATAAGTCCTAAAATTTGAGGCGTAAGCCCCAAGCATAAAAACGTAAGTCCTGGGCGTAAAAACGTATGCCCATGCATTTTTAATATATTTTTTAGAACTTTTTTTGCTTTAAATAATATTTTTATTATTGGTGTAATGATA
        CAGTGTTTT AAA  CG      TGGGGCGAGTC     GTA AGT  CGGGGCGGGGCGT                                                                                                                                                                                           
        ||||||||| |||  ||      |||||||||||     ||| |||  |||||||||||||                                                                                                                                                                                           T
        GTCACAAAA TTT  GC      ACTCTGTTCAG     TAT TCA  GTCCCGCTCCGTA                                                                                                                                                                                           
ATATCCTG         T   CC  CCCCGC           TAAAA   G   -T             TTAGGGGCTCTGTGCTCCGCATTCAGGTTACCTAGATGCCCCCATCAGAGTACATATAAGTTAAAATATTAAAATAATGTTTATTTTATTCGTTTTCATTTGGAAAGTTAATAAATACTAAAAATAAACTCTATTCATAATTATTAGTTATTACTTCTTTTTTTCATAATATTAATGATAAACTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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