SE3830121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8439
  • Solanum tuberosum
  • SE3830121
  • hAT
  • Hat5
  • chr10:29926749-29927251
  • GTTATGTG
  • TATGTGTAGGGGTGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
GT    T              ----AATGA   CAAACATAGGTAACCCGCCCAACCTGCCCAGAATTTTAAGGGTTGGGCTCAAGATAATTTGAATTGGGTTCAATCTCAACCCTTTCAAGCCTAACCTATTTTAAGAGAATCCTCAATTGAGCCCAATTCAATCTCCAATTTCAACCCGTTTTAAAACTCTTTATTAAGATATGTTCCTATATTGAAGGTATGAATTATTATTTATTTAATATCTTTTAGG
  TATG GTAGGGGTGTCAAA         ACC                                                                                                                                                                                                                            
  |||| ||||||||||||||         |||                                                                                                                                                                                                                            A
  GTGT TATCCCCACAGTTT         ACT                                                                                                                                                                                                                            
GT    T              ACCCGTCCA   CAACTTTAACCTCTATTATTTAATCAACTTTATATTTAACCCAACCCAGAACTGGGCGGGTTCAAATGAAACCCGAATTACCCAACCCGATTTTTACCCAACCCAGAACTGGGTGAATTAGAGTTATTAAAATTGTATCACTATAAATTGAAAATATTAGTGTTAAACTTAAAGTTGAGTTCTATAAAATAAAAAAATTTCATTATTTACCTATCTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End