SE3810122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8440
  • Solanum tuberosum
  • SE3810122
  • Tc1/Mariner
  • St13
  • chr12:66421308-66421559
  • TA
  • TACTCCCTCCGTTACAATTTGTTTGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
             A A             ACTTTCATTTTTAGTTCAT         AATGACCGTTTCCTTTTTTAGCAACTCTTTAATATCAAGTCTCCACGCAACATGTTTAAGACCACAAAATTAAAGGGC
TACTCCCTCCGTT C ATTTGTTTGATCT                   TTAAAAAAG                                                                              
||||||||||||| | |||||||||||||                   |||||||||                                                                              A
ATGAGGGAGGCAA G TAAACAAACTGGA                   TAAAACTGA                                                                              
             A A             -------------------         ACCGTGCCTCGAATTTTTTCATTTCTTCTGAAAACTTAGAACACCAAATTTTAATTTTTATACAGTTTACATAGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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