Plant MITE

SE3810123

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8441
Solanum tuberosum
SE3810123
Tc1/Mariner
St5
chr06:26591706-26591959
TA
TACTCCCTCCGTTTCAAAAAGAATGACCT

Secondary structure and sequence

TSD TIR

5'

3'

                      A  A   CCTTTTCTTTTT      TTTAA  -     T --- CCTCTTTCCTTTTTTTGGTAACATTTTACTTTCAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAG
TACTCCCTCCGTTTCAAAAAGA TG CCT            AGTTTG     AA AAGAA G   A                                                                        
|||||||||||||||||||||| || |||            ||||||     || ||||| |   |                                                                         
ATGAGGGAGGTAAAGTTTTTCT AC GGA            TCAAAC     TG ACCGT G   C                                                                        
                      C  C   ------------      -----  A     - CCT AAATTCTTTTATTTCTTCTGAAAACTTAGAACACTAGAATTTAATTTCAATACAGTTTACATGTTTTTACGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810123

TACTCCCTCCGTTTCAAAAAGAATGACCTCCTTTTCTTTTTAGTTTGTTTAAAAAAGAATGACCTCTTTCCTTTTTTTGGTAACATTTTACTTTCAACTTTCCACGTGGCATGTTTAAGACCACAAGATTAAAGGGCATTTTTGTACATTTGACATAACTTTAATTTAAGATCACAAGATTCAAAAGTCTTCTTTATTTTCTTAAACTCCGTGCCAAGTCAAACTAGGCCACTCTTTTTGAAATGGAGGGAGTA

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