SE3820125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8443
  • Solanum tuberosum
  • SE3820125
  • Mutator
  • M8
  • chr11:9902443-9902756
  • TATCTTTTA
  • TAGGCATAATACATAAACATGACCCTTAACTTGGCTTTAACGGACAACTATGCCCTCCAACTTTGAGTGTGCACAAGTAGACACTTAAACTTATATAAATTTGAACAAGTAGACACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCTTT                       C           T   ACG          C   CC       A     C                 C  A      T                 CA    G ACATGGCGTAATACACGTAGGACGCC
       TAGGCATAATACATAAACATGAC CTTAACTTGGC TTA   GACAACTATG CCT  AACTTTG GTGTG ACAAGTAGACACTTAAA TT TATAAA TTGAACAAGTAGACACA  TGTC T                          
       ||||||||||||||||||||||| ||||||||||| |||   |||||||||| |||  ||||||| ||||| ||||||||||||||||| || |||||| |||||||||||||||||  |||| |                           
       ATCCGTATTATGTATTTGTACTG GAATTGAACTG AGT   CTGTTGATAC GGA  TTGAAAC CACAC TGTTCATCTGTGAATTT AA ATATTT AACTTGTTTATCTGTGT  AGCA G                          
ATTTTCT                       A           C   CAA          T   AA       C     A                 A  C      T                 -A    - GATGTACTGTTAAAACACAGGATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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