SE3820128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8446
  • Solanum tuberosum
  • SE3820128
  • Mutator
  • M27
  • chr05:57767113-57767464
  • GATGATTTT
  • GATTTTGGAGAAAATGATCAAAATGGTCCTTGATGTATTGGGGTTGCTTTATTTTGGTCCTCAATATATTCTAGGTGATTGAAATAGTCCTTCATGTATGACAAAATGTGTTCAATTTAGTCTTTACCCTAAACTTAACATTTTACC

Secondary structure and sequence

TSD    TIR
5'



3'
GAT    T G                                  G                            C                             A                        -                      TCCAAA   T                 G
   GATT T GAGAAAATGATCAAAATGGTCCTTGATGTATTGG GTTGCTTTATTTTGGTCCTCAATATATT TAGGTGATTGAAATAGTCCTTCATGTATG CAAAATGTGTTCAATTTAGTCTTT ACCCTAAACTTAACATTTTACC      AAC GTTAAATATAATGGTGG 
   |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||      ||| ||||||||||||||||| C
   TTAG A CTCTTTTACTAGTTTTACCAGGAACTACATAACC CAACGAAATAAAACCAGGAGTTATATAA ATCCACTAACTTTATCAGGAAGTACATAC GTTTTACACAAGTTAAATCAGAAA TGGGATTTGAATTGTAAAATGG      TTG CAATTTATATTGCCACC 
GTT    T G                                  A                            A                             A                        A                      ------   C                 T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End