SE3830130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8448
  • Solanum tuberosum
  • SE3830130
  • hAT
  • Hat24
  • chr06:3544879-3545488
  • GTCTAGAG
  • TCTAGAGTAGGGGTGTGC

Secondary structure and sequence

TSD    TIR
5'



3'
G      G           ----------------        A  TAA      AA    ACCG  A    -A TATTGGTTTATTGATATTGGGTTATTGGGCTAACGGTTTTTAAACGGTTTTGCAAAAAATTTTATTGGGTTATTGGTTCGGTTTCCGGTTTTATAATTTTTGTTAATGGTTAAACCGATAACCCAATAAGACTGTACTAAATTTACTAGTCTTATTGTTAATGGTTAAACGATTATTACTTTCACACTTTTTGTTAATGGTTAAACGATTGTTACTTTCACACTTTTTCCTTTGAATGTGTCT
 TCTAGA TAGGGGTGTGC                AAAAACCG TT   CCAATA  CCGA    AA AAAC  C                                                                                                                                                                                                                                                   
 |||||| |||||||||||                |||||||| ||   ||||||  ||||    || ||||  |                                                                                                                                                                                                                                                   A
 AGATCT ATCCCCACGCG                GCCAAAAT CC   CAATAA  CCAA    GC CAAA  G                                                                                                                                                                                                                                                   
G      G           TAGCCAGTCAAACCAA        -  --A      --    ----  -    TA CCAAAAGCCAAACATTTATGAAGTTTGGCTATTGGTTTAGTTATTGTATAAAGAATAGCCAAAAACCAATTAGCCAAATACCATGAATTGCCAAGCCAAAAGCCAAATTGGTTATTCTTTTATGAGTATATATAATATATGTGCTATTCTTTTAAAAGTTTATTTAGTATACCAAAAAGGTCGTAAACCGTACTTTCATTATTAGTATTTTCATTGTTAGTAAAAAGAACGTTCAAATCTGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End