Plant MITE

SE3810132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8450
Solanum tuberosum
SE3810132
Tc1/Mariner
St1
chr07:48710313-48710580
N.A.
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTCAT                                  --CCTTTTA   TTGTCCCTAGTTACTTGTCCATTTTGACAAATCAAGAAAGGACAAATTTTTTTACCTATTATACGCTCAATTAAATGACTAATTAC
     TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT         TAG                                                                                      
     ||||||||||||||||||||||||||||||||||         |||                                                                                      T
     ATGAGGGAGACAGGGATTAATGAACAGGTGAAAA         GTG                                                                                      
                                       CTTATCCAT   GATAATTCTTTAGTTAATTACTGTATCACTCAAATGGTAAAATGGGGATAATTAATACTTCACCTACTTTTCAAGACGTAAAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810132

TTCATTACTCCCTCTGTCCCTAATTACTTGTCCACTTTTCCTTTTATAGTTGTCCCTAGTTACTTGTCCATTTTGACAAATCAAGAAAGGACAAATTTTTTTACCTATTATACGCTCAATTAAATGACTAATTACTTTGAAAATGCAGAACTTTTCATCCACTTCATAATTAATAGGGGTAAAATGGTAAACTCACTATGTCATTAATTGATTTCTTAATAGGTGTACCTATTCAAAAGTGGACAAGTAATTAGGGACAGAGGGAGTA

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