SE3810136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8454
  • Solanum tuberosum
  • SE3810136
  • Tc1/Mariner
  • St14
  • chr04:56656711-56657057
  • TA
  • CCTCCGTTCTTTATTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTC           T         TC    ---------- TACTAAAAAAAAATAGATGCTCCTTATTAATACTTGTCATTTCACAAAACCAATACATAAATAACACTGTTCTTCCTATTTTAATCTTGAGAGTTATTTGCCTTGAAAGTATGAATTTGACTAACATAGAAAAATAA
     CCTCCGTTCTT ATTTATAGG  CATC          T                                                                                                                                         
     ||||||||||| |||||||||  ||||          |                                                                                                                                          
     GGAGGCAAGGA TAAATATAC  AGTG          A                                                                                                                                         
ATAAA           -         --    ATAAAATCTA AGTGCAGGGAATTCTTTAATCCATTTAAATAATAACATGGGAATAAATCACAAGAGAACTTCAGTTCAAAAATTATTTACTTCTATTTAATTAAATGAAACTAATTAATTTAACTGGTTACTTGTGTTTAATTAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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