Plant MITE

SE3810139

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8457
Solanum tuberosum
SE3810139
Tc1/Mariner
St15
chr11:10717654-10717920
TA
TACTCCCTTCGTCCAACAATAGTTGTCCACTATACT

Secondary structure and sequence

TSD TIR

5'

3'

     C   C                C      --   ----A       TTGTCCAACAATACTTGTCCAATTTAGAAAATCAAGAGATAATTTATCTTTTGTGACTATTTTACCATTGCTATTAAATATTATTT
TACTC CTT GTCCAACAATAGTTGT CACTAT  ACT     AAAATAG                                                                                      
||||| ||| |||||||||||||||| ||||||  |||     |||||||                                                                                      A
ATGAG GAG CAGGTTGTTATCAACA GTGATA  TGA     GTGGGGA                                                                                      
     A   A                A      AC   ACCGT       ATTCTTTGTTATTTATTATCCCCATTATAATGATATAATAAGAAACTGAAATAATTTAATTTACGAAACTCTTTACACAATCTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810139

TACTCCCTTCGTCCAACAATAGTTGTCCACTATACTAAAAATAGTTGTCCAACAATACTTGTCCAATTTAGAAAATCAAGAGATAATTTATCTTTTGTGACTATTTTACCATTGCTATTAAATATTATTTATCATCTAACACATTTCTCAAAGCATTTAATTTAATAAAGTCAAAGAATAATATAGTAATATTACCCCTATTATTTATTGTTTCTTAAGGGGTGTGCCAAGTCAATAGTGAACAACTATTGTTGGACAGAGAGAGTA

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