SE3840140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8458
  • Solanum tuberosum
  • SE3840140
  • CACTA
  • Ca1
  • chr05:4639068-4639284
  • GTA
  • CACTACATCAAAAATGATCATTAGCGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA       T          CA         ATTAATTTT     A  A     TATGTATTTTTAGCGGCAATTAGCACTCTTTGTATATGTCCCTAAAGCCTTTAGCGACA
   CACTACA CAAAAATGAT  TTAGCGGCA         TAATT CC CTAAA                                                           
   ||||||| ||||||||||  |||||||||         ||||| || |||||                                                            
   GTGATGT GTTTTTGTTG  AATCGCCGT         TATTT AT ATCTG                                                           
ATG       T          AA         ---------     -  -     TAATTATTTCTCACGATTTCATAAATGGCCATAATCATGAATTCACGGTAATCTTGGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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