SE3810143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8461
  • Solanum tuberosum
  • SE3810143
  • Tc1/Mariner
  • St3
  • chr07:20594260-20594526
  • TA
  • TACTCCCTCCGTCCAATAATAGTTGTCCATTATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
        CC                       --   AAAAATAG      AATAATA TTGTCCAATTTAGCAAATCAAAAGATAATTTACTTTTTGTGTTTATTTTACCATTGCAATTAAATACTATTTATCATCT
TACTCCCT  GTCCAATAATAGTTGTCCATTAT  ACT        TTATCC       T                                                                               
||||||||  |||||||||||||||||||||||  |||        ||||||       |                                                                               A
ATGAGGGA  CAGGTTGTTATCAACAGGTGATA  TGA        GTGGGG       A                                                                               
        AA                       AC   ---ACCGT      ------- ATTCTTTGTTATTTATTATCCCCATTATAATGATAAAATAGGAAACTGAAACAATTTAAATTACTAAACTCTTTACACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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