Plant MITE

SE3810144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8462
Solanum tuberosum
SE3810144
Tc1/Mariner
St13
chr06:46021249-46021501
TA
TACTCCCTCCGTTTCAAAAAGAATGTCCT

Secondary structure and sequence

TSD TIR

5'

3'

              C          T   A    -        ACGGAGTTTAAGAAAAGAAAGAAGACTTTTAAATTTTGTGGTTCAAAATTAAAGTTATGTCAAATGTACCAAAATGTCCTTTAA
TACTCCCTCCGTTT AAAAAGAATG CCT GTTT GACTTGGA                                                                                    
|||||||||||||| |||||||||| ||| |||| ||||||||                                                                                    T
ATGAGGGAGGCAAA TTTTTCTTAC GGA GTAA GGAAAAAT                                                                                    
              T          T   -    A        CAGACAAATTTTTTCTTACTAGGGAAAGAGAAAAATCGTTGTGAAATTGAAGTTGAAAAGTGTACAGTACAAATTCCGGTGTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810144

TACTCCCTCCGTTTCAAAAAGAATGTCCTAGTTTGACTTGGAACGGAGTTTAAGAAAAGAAAGAAGACTTTTAAATTTTGTGGTTCAAAATTAAAGTTATGTCAAATGTACCAAAATGTCCTTTAATCTTGTGGCCTTAAACATGACATGTGAAAAGTTGAAGTTAAAGTGTTGCTAAAAAGAGAAAGGGATCATTCTTTTTTAAACAGACTAAAAAGGAAATGAGGTCATTCTTTTTTAAACGGAGGGAGTA

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