Plant MITE

SE3820151

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8469
Solanum tuberosum
SE3820151
Mutator
M37
chr01:86956501-86957235
TTTATATTA
TATATTAGAGAAAATGGTCTAAAAACCCCCTAACCTATACCCGAAATCTCAACTACACACTCCAACTTCACGGGTGTCCTATTACCCCCTGAACTTCATATTTCTCTATTTTCTACACACTTAAACGCTGACCT

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TT                      -                                                             -       C                                     GTCAT        TTCTTACCTCCTCTAGGCGCGTTAGAAGTGAATTTTGACGAAAATTTCCTCTTTCTCCAACACTCATCTTCCCCACCCTTCAATAAACCATTGTTTCCTCTTCCCCACCATTAACCCTTGTTCCTTTTAGAAAAAATCACGTTTTTCTCTCAAAAATAAGTAGGGTTTAGTTGTTTATGTTCATTTCTACTTTAAATCTTGAATTTAGGATTTGTAATCT
   TATA  AGAGAAAATGGTCTAAAAACCC CCTAACCTATACCCGAAATCTCAACTACACACTCCAACTTCACGGGTGTCCTATTACCCCC TGAACTT ATATTTCTCTATTTTCTACACACTTAAACGCTGACCT     AGGAGGTG                                                                                                                                                                                                                            
   ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||     ||||||||                                                                                                                                                                                                                             
   ATAT  TCTCTTTTACCAGATTTTTGGG GGGTTGGATATGGGCTTTAGGGTTGATGTGTGAGGTTGAAGTGCCTACAGGATAATGGGGG ACTTGAA TATAAAGAGATAAAAGATGTGTGAATTTGCGACTGGA     GTTGTGTA                                                                                                                                                                                                                            
ATT    -T                      A                                                             T       A                                     -----        TTTGGTTTGTCTATCAGGTGCACTAACGTGCGCGGCCCAGGGGTAAAGCCAACTACTAGCTTCCTAAAACAACACATAAAACTTGAACTAAAGCATCAATAGTTGATTAAAACCCAAACTAAGTAGGTATGTTTCGAATAAGTTCAAAAGTAAACGGGAAAAACTACTTAAAGTTCTTTTAAGTTTTAAGTTTAATCTCTGGATTTATTCTTTAATCTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820151

TTTATATTAGAGAAAATGGTCTAAAAACCCCCTAACCTATACCCGAAATCTCAACTACACACTCCAACTTCACGGGTGTCCTATTACCCCCTGAACTTCATATTTCTCTATTTTCTACACACTTAAACGCTGACCTGTCATAGGAGGTGTTCTTACCTCCTCTAGGCGCGTTAGAAGTGAATTTTGACGAAAATTTCCTCTTTCTCCAACACTCATCTTCCCCACCCTTCAATAAACCATTGTTTCCTCTTCCCCACCATTAACCCTTGTTCCTTTTAGAAAAAATCACGTTTTTCTCTCAAAAATAAGTAGGGTTTAGTTGTTTATGTTCATTTCTACTTTAAATCTTGAATTTAGGATTTGTAATCTGCTCTAATTTCTTATTTAGGTCTCTAATTTGAATTTTGAATTTTCTTGAAATTCATCAAAAAGGGCAAATGAAAACTTGAATAAGCTTTGTATGGATGAATCAAACCCAAAATTAGTTGATAACTACGAAATCAAGTTCAAAATACACAACAAAATCCTTCGATCATCAACCGAAATGGGGACCCGGCGCGTGCAATCACGTGGACTATCTGTTTGGTTTATGTGTTGAGGTCAGCGTTTAAGTGTGTAGAAAATAGAGAAATATAAAGTTCATGGGGGTAATAGGACATCCGTGAAGTTGGAGTGTGTAGTTGGGATTTCGGGTATAGGTTGGGAGGGTTTTTAGACCATTTTCTCTTTATATTA

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