SE3830156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8474
  • Solanum tuberosum
  • SE3830156
  • hAT
  • Hat26
  • chr06:34831535-34832300
  • TACATAGA
  • ATAGAGCCGTCAAAACGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACATAG       C       C     TA    -     G -  --     -    A CCCATTATTGGGGTAGGGTTGGAATATGAATTTTCAAGTCCTTTTAAAACTAGGGCATATAAGCCCGGCCCATATAAGCCCTTGGCCCTTGAGGCTTGATCGGGCCGGGCCAAGGTCGGTCCATGGGCCAAAACTTTTTATTTAAGGGTAACTTACAATAATGTCACTAGTATATAATCTAATTACTTAAATACACACTATATTGTAATATTATGAATCTTACCAGATTTTGGTACGTCCAGATACATATATCTCGGAATATATGGACTCAAAATTAGGTTAATATGTTCTAGATACACTCTATCAAAGTAGATTCGCATGTATCTAG
       ATAGAGC GTCAAAA GGGCT  GCCC ATGGA C CG  GCCCA ACCC A                                                                                                                                                                                                                                                                                                                                        
       ||||||| ||||||| |||||  |||| ||||| | ||  ||||| |||| |                                                                                                                                                                                                                                                                                                                                         
       TATCTCG CAGTTTT CCCGG  CGGG CGGGG T GG  GGGTT GGAG C                                                                                                                                                                                                                                                                                                                                        
AGATACA       A       T     -C    T     - G  CT     C    - TCCCGGTTCCTTAAACTTCTCGATCCCGCCCGACCGGGAAGTAAACTTTCTCGGATTTTTACAAGTTGGGTTGGGATCTTCCCGGTTCCCGACCCCGCCCGATCGGGAAAAAAAAGTAAAAAAAAGAAAAGTTTGAATATTAAGATATTGTAGTTCTTTTACTCTTCTAAAAGTTAAGTTTATACTGTTTGTTATCACAACAAAATTATTGTGATCGTTTTTCAGATCACATTAATCGTACATAGAGTGTATGATCTATGCGCTCGTTCTATTCTCTCACTCTTCGTTCTAACCTCCCTCCGCACCCGCGCTCTAAACAGATACGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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