Plant MITE

SE3850158

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8476
Solanum tuberosum
SE3850158
PIF/harbinger
To5
chr04:28888915-28889371
TTA
AGGGGTCGTTTGGTAGAGTGTAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                       AAAAA      - AATAGAGTGTATTAGTAATGCAAACATTAGTAATGCATGTATTAGTTATACTTGTATTAGTTATGCATAGATTATTTCTTATGCATTGTTTGGTTTGCTGTATTAAAAATAGTATTCATTGTATAAAAATATTTATTTACAAAAGTATCCTTCACAATTATGGTGGAAAAGATGTAAAAGTACTTTTGAGGG
  AGGGGTCGTTTGGTAGAGTGTAT     TAATAC C                                                                                                                                                                                                
  |||||||||||||||||||||||     |||||| |                                                                                                                                                                                                G
  TCCCCAGTAAGCCATCTCACATA     CGTTTT A                                                                                                                                                                                                
AT                       ---AT      G TTACGTACGAAATTAATATACATAATCATTAAGGAACAAACCACGTTCAAAAGTAACATACATATTAATTACGAACGAAATCACTATGTGAGATAACACATAACTCCTCACATAATGATTATGGATCTTTAGGTACCATAATCATTACGTTTCCTAAATTACGTACGTAATTATACCAATTTCTGAGTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850158

TTAGGGGTCGTTTGGTAGAGTGTATAAAAATAATACCAATAGAGTGTATTAGTAATGCAAACATTAGTAATGCATGTATTAGTTATACTTGTATTAGTTATGCATAGATTATTTCTTATGCATTGTTTGGTTTGCTGTATTAAAAATAGTATTCATTGTATAAAAATATTTATTTACAAAAGTATCCTTCACAATTATGGTGGAAAAGATGTAAAAGTACTTTTGAGGGGTAATTGAGTCTTTAACCATATTAATGCATGCATTAAATCCTTTGCATTACTAATACCATGGATTTCTAGGTATTAGTAATACACTCCTCAATACACAATAGAGTGTATCACTAAAGCAAGCATTAATTATACATACAATGAAAACTTGCACCAAACAAGGAATTACTAATACATATAATTAAAGCATGCATTAGTTTTGCTAATACACTCTACCGAATGACCCCTTA

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