Plant MITE

SE3810159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8477
Solanum tuberosum
SE3810159
Tc1/Mariner
St1
chr01:88656946-88657224
TA
TACTCCCTCTGTCCCTAATTACTTGTCCAATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        C                  CA      CTTTTT  -       CTAATTAC  GTCCATTTTGACAAATCAAGAAAGGACAATTATTTTTTACCTATTATACCCTCAATTAATTACTTTGAAATAGGAAGAATTTC
TACTCCCT TGTCCCTAATTACTTGTC  ATTTTT      TA GTTGTCC        TT                                                                                   
|||||||| ||||||||||||||||||  ||||||      || |||||||        ||                                                                                   T
ATGAGGGA ACAGGGATTAATGAACAG  TGAAAA      TG GTGGATA        AT                                                                                   
        T                  -A      CTTAAC  T       --------  TCTTTTATTATTAACTGTATCACTCAAATGGTAAAATGGGGATAATTAATACTTCACCTACTTAATTTTTGAATTCTAAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810159

TACTCCCTCTGTCCCTAATTACTTGTCCAATTTTTCTTTTTTAGTTGTCCCTAATTACTTGTCCATTTTGACAAATCAAGAAAGGACAATTATTTTTTACCTATTATACCCTCAATTAATTACTTTGAAATAGGAAGAATTTCTTGAAAATCTTAAGTTTTTAATTCATCCACTTCATAATTAATAGGGGTAAAATGGTAAACTCACTATGTCAATTATTATTTTCTTAATAGGTGTGTCAATTCAAAAGTAGACAAGTAATTAGGGACATAGGGAGTA

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