Plant MITE

SE3810161

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8479
Solanum tuberosum
SE3810161
Tc1/Mariner
St12
chr02:67474220-67474515
TA
TACTCCCTCCGTCCCTATTTAGGTGTCC

Secondary structure and sequence

TSD TIR

5'

3'

                      G     -----T      -AAA  GCACACAGATTAAGGCAACAATGATTAGCACAGTAAAGTTACAATTTTATCCTTGTAGTACAATTTACAATTTCAAAATAAATTAACTCAAGATAACTAATCAAT
TACTCCCTCCGTCCCTATTTAG TGTCC      CTTTAG    TG                                                                                                         
|||||||||||||||||||||| |||||      ||||||    ||                                                                                                          
ATGAGGGAGGCAGGGATAAATC ACAGG      GGAGAA    AA                                                                                                         
                      A     TATAAA      AATC  CAGGTAAAACTGTTTAGTTCTTTCGTGTTGTTTTTAAAAGGATAATATGGGAATAAATTTATTTCAATAGTATTTATTTCATTTATTTGAATACTTAAAAGGTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810161

TACTCCCTCCGTCCCTATTTAGGTGTCCTCTTTAGAAATGGCACACAGATTAAGGCAACAATGATTAGCACAGTAAAGTTACAATTTTATCCTTGTAGTACAATTTACAATTTCAAAATAAATTAACTCAAGATAACTAATCAATGTTGGAAAATTCATAAGTTTATTTACTTTATTTATGATAACTTTATTTAAATAAGGGTATAATAGGAAAATTTTTGTTGTGCTTTCTTGATTTGTCAAAATGGACAACTAAAAGAGGAAATATGGACAACTAAATAGGGACGGAGGGAGTA

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