SE3810162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8480
  • Solanum tuberosum
  • SE3810162
  • Tc1/Mariner
  • St6
  • chr12:7268316-7268638
  • N.A.
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
             -  C      CCCAATTTATGTAACACATTTTGGATTTCGAGATTCAAACAAATCTATCTTTGACCGTAATTTTTTCATATATCTTTGAATTATTTTGAACTATCAATTATTGAAACTTATAGTATTTTTTATGTAGTTTACAAATATATAAAT
          TAC TC CTCTGT                                                                                                                                                
          ||| || ||||||                                                                                                                                                T
          AGG TT GGGCAG                                                                                                                                                
GTAGAAGACG   G  -      AGACTTAAGAACTGCTCCAAACTTACAAGAGTAAAAATAATGAGAGAGACAGGGTTAAATACACTGTGTAAAGCGAAAAACTCTCAGTTTGTCAAATTCAAACTGGTTCTTAAACGAGTACCTTAGAAATTAAAAAATTTTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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