SE3810166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8484
  • Solanum tuberosum
  • SE3810166
  • Tc1/Mariner
  • St13
  • chr02:30076367-30076618
  • TA
  • TACTCCCTCCGTTTCACAAAGAATGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                             ---G       T  GCACGGAGTTTAAGTAAATAAAGAAGACTTTTGAATCTTGTGGTCCTAAATTAAAGTTATGTCAAATGTACAAAATTGCCCTTAA
TACTCCCTCCGTTTCACAAAGAATGACCT    GTTTGAC TG                                                                                     
|||||||||||||||||||||||||||||    ||||||| ||                                                                                      
ATGAGGGAGGCAAAGTGTTTCTTACTGGA    AGGAAAA AT                                                                                     
                             GGAA       -  CAGTCAAAGTTTTTCTTACTGGAGAAAGGAAAAAACCATTGTAAAATGAAAAACGAAAGGTGCACCGTACAAATTCTGGTGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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