SE3820169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8487
  • Solanum tuberosum
  • SE3820169
  • Mutator
  • M2
  • chr06:37285940-37286328
  • TATATTAAA
  • AGGGCAAATTACAGAAATCACGTACTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTAA    C              ACG       A  -GCAAAATTACAATC         A      -    --TTA     AC      ---AA  GATACAATAATATAAACGCTGATACATTAATCTGATGCGCGAGATACATTAATCATTAAGTAAGATACATTACATTTTATACATGATACACTAATCTG
        AGGG AAATTACAGAAATC   TACTTTT AG               TATCCCTTA AAGTTT ATAA     CAGAA  CCCTCA     TG                                                                                                  
        |||| ||||||||||||||   ||||||| ||               ||||||||| |||||| ||||     |||||  ||||||     ||                                                                                                  A
        TCCT TTTAATGTCTTTAG   GTGGAAA TC               ATAGGGGAT TTCAAA TGTT     GTTTT  GGGAGT     CG                                                                                                  
AAATTATA    T              --A       A  AAATGAATAACGGTA         A      A    TAGAG     -A      AAAAG  CGTAGTCTAATCACATAGAACGCGTAGTCTAATTACATAGTCGCGAATATAATAACATAGAGTGCGTAGTCTAATCACATAGTACATATTTTACATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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