Plant MITE

SE3810170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8488
Solanum tuberosum
SE3810170
Tc1/Mariner
St5
chr08:18855023-18855274
TA
TACTCCCTCCGTTTCAATTTGATCGTCCT

Secondary structure and sequence

TSD TIR

5'

3'

                     ATC     -----------     -----     GG    AAGTTTAAGAAAGTAAAGAATACTTTTGAATCTTGTGGTCTTAAATTAAAGATATGTAGAATGTACCAAATTGT
TACTCCCTCCGTTTCAATTTG   GTCCT           GTTTT     GACTT  CATG                                                                          
|||||||||||||||||||||   |||||           |||||     |||||  ||||                                                                           
ATGAGGGAGGTAAAGTTAAAT   CAGGA           TTCAG     TTTTT  TCTT                                                                          
                     AAA     TGAAAGGAAAA     GCAAA     --    ACAGAGAAAGGAAAAAACCGTTGAGAAATTAAAGTTGAAAAGTGTATCGCATAAATTCTGGTGTTCTTATTTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810170

TACTCCCTCCGTTTCAATTTGATCGTCCTGTTTTGACTTGGCATGAAGTTTAAGAAAGTAAAGAATACTTTTGAATCTTGTGGTCTTAAATTAAAGATATGTAGAATGTACCAAATTGTCCTTTATTCTTGTGGTCTTAAATACGCTATGTGAAAAGTTGAAATTAAAGAGTTGCCAAAAAAGGAAAGAGACATTCTTTTTTAAACGGACTTAAAAGGAAAGTAGGACAAATAAATTGAAATGGAGGGAGTA

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