Plant MITE

SE3810172

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8490
Solanum tuberosum
SE3810172
Tc1/Mariner
St1
chr11:10274448-10274725
TA
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGG

Secondary structure and sequence

TSD TIR

5'

3'

          G                C  -    --GAA    -CACA    --TTAAG   TCAATAATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAATTAAAAACTTAATATTTTCAA
TACTCCCTCT TCCCTAATTACTTGTC AC TTTT     TTGG     CCTA       AAA                                                                               
|||||||||| |||||||||||||||| || ||||     ||||     ||||       |||                                                                                
ATGAGGGAGA AGGGATTAATGAACAG TG AAAG     AATC     GGAT       CAG                                                                               
          A                A  T    GAAAA    AACAG    TAATGAA   GTAAAACTGTTTAGTTCTTTTCTGTTAAAAAAAATGGATAATATGGGAGTTAATTAATGAAACTTTTTACATCTTGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810172

TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGGCACACCTATTAAGAAATCAATAATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTATGAAGTGGATGAATTAAAAACTTAATATTTTCAAGAAGTTCTACATTTTTCAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAAATTGTCTTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGGACAACTAAAAAAGGAAATGTAGACAAGTAATTAGGGAAAGAGGGAGTA

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