SE3820173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8491
  • Solanum tuberosum
  • SE3820173
  • Mutator
  • M11
  • chr11:15104159-15104477
  • TAGTTTCGG
  • GGGATAAGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTTTCGGC        A  CAAA  C             C       T  A        ATTT     T         TAC      TA    C       G                    -            ACA     --TGA    A TTAA   A
          GGGATAAG CA    TA CCCTAGACTATGA CGAAATC CA AGACACAC    ACTAA CTAAGGTCC   TACCCC  AACT ATTTTTT TGTAATTTTGTACACCTTTT GGCTTACGTGGC   CTCCG     CTCC C    GTG 
          |||||||| ||    || ||||||||||||| ||||||| || ||||||||    ||||| |||||||||   ||||||  |||| ||||||| |||||||||||||||||||| ||||||||||||   |||||     |||| |    ||| G
          CCCTATTC GT    AT GGGATCTGATACT GCTTTAG GT TCTGTGTG    TGATT GATTCCAGG   ATGGGG  TTGA TAAAAAA ACATTAAAATATGTGGAAAA CCGGATGCACCG   GAGGT     GAGG G    CAC 
CGGTTTTGAT        C  AATC  A             T       C  C        GAAT     T         CTA      -C    T       A                    A            ---     TTGTA    - --TG   G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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