Plant MITE

SE3810174

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8492
Solanum tuberosum
SE3810174
Tc1/Mariner
St6
chr08:42169185-42169446
TA
TACTCCCTCTGTCCCAATTTATGTGACACTTTTCGTTTTTCGAGAGTCAAACAATTTAAGTTTGACCAGAAATTTGCGCATGAAATCTT

Secondary structure and sequence

TSD TIR

5'

3'

                A        A         TT        G        -    AG       AG      GCG    AA     ---------CAAT     -  AATGAAA   ATATATTTGTAAACTACGTA
TACTCCCTCTGTCCCA TTTATGTG CACTTTTCG  TTTCGAGA TCAAACAA TTTA  TTTGACC  AAATTT   CATG  ATCTT             TTTTT TA       TTT                    
|||||||||||||||| |||||||| |||||||||  |||||||| |||||||| ||||  |||||||  ||||||   ||||  |||||             ||||| ||       |||                     
ATGAGGGAGGCAGGGT AAATACAC GTGAAAAGC  AAGGTTCT AGTTTGTT AGAT  AAACTGG  TTTAAA   GTAT  TAGAA             TGATA TT       AAT                    
                A        C         CT        A        C    AG       CA      -AA    -C     AATTTGTAAAACT     G  -------   AACATTGAATATCACGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810174

TACTCCCTCTGTCCCAATTTATGTGACACTTTTCGTTTTTCGAGAGTCAAACAATTTAAGTTTGACCAGAAATTTGCGCATGAAATCTTCAATTTTTTTAAATGAAATTTATATATTTGTAAACTACGTAAAAAGCACTATAAGTTACAATAATTGATAGTTCAAAATGTTTAAAAGATCTATGAAAAATTTACGGTCAAAGATAGACTTGTTTGAATCTTGGAATCCGAAAAGTGCCACATAAAATGGGACGGAGGGAGTA

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