Plant MITE

SE3840175

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8493
Solanum tuberosum
SE3840175
CACTA
Ca1
chr03:14114410-14114633
ACA
CACTACA

Secondary structure and sequence

TSD TIR

5'

3'

ACA       ACAAAA    - TT AG   CAATAAATATAGACATTAA  --    G GATAAAGTCTTTACCGGCATTAGTTAAATGTCATTAGAACCAATATAGCTAAAGACTTTAGGGACAT
   CACTACA      TAAC T  T  CGG                   TA  AAGA T                                                                   
   |||||||      |||| |  |  |||                   ||  |||| |                                                                    
   GTGATGT      TTAC A  G  TAA                   TC  GGTT A                                                                   
ACA       -ATTTT    T -- --   -------------------  GA    - ATTAATTGCTGTTATCGAATTAACGGCGATTTATACATAAATATCGCCGTTAATCGTGAGAAACATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3840175

ACACACTACAACAAAATAACTTTTAGCGGCAATAAATATAGACATTAATAAAGAGTGATAAAGTCTTTACCGGCATTAGTTAAATGTCATTAGAACCAATATAGCTAAAGACTTTAGGGACATATACAAAGAGTGCTAATTGCCGCTATAAATACATATTTAGCGGCAATTAAGCTATTGTCGTTAATTAATTGGAGCTAATGATCATTTTTTATGTAGTGACA

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