SE3820176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8494
  • Solanum tuberosum
  • SE3820176
  • Mutator
  • M8
  • chr03:20049210-20049528
  • AAGATTAAA
  • GGCATAATACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGATTAAA            AAATATG              A     T         GA                    C  A                               A         TCA            -CCTT       AATTTTGTGTC
         GGCATAATACGT       ACCCTTAACTTGGC TCAGC GACAACTAT  CCTTTAACTTTGGGTGTGCA AA TAGGCACTTAAACTTGTATAAAATTGAACAA TAGACACAT   TCCTACATGGCA     ACATGAA           
         ||||||||||||       |||||||||||||| ||||| |||||||||  |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||   ||||||||||||     |||||||           C
         CCGTATTATGTA       TGGGAATTGAACCG AGTTG CTGTTGATG  GGAAATTGAAATTCACACGT TT ATCTGTGAATTTGAACATATTTTAACTTGTT ATCTGTGTG   AGGATGTACCGT     ATACATC           
AAATTAGAA            -------              A     C         TG                    A  C                               C         TAC            ATTAT       CTGCGGTGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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