SE3830182

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8500
  • Solanum tuberosum
  • SE3830182
  • hAT
  • Hat19
  • chr01:79202669-79202805
  • ATTTGAAG
  • TTTGAAGCTATGTTGCTTGGACTCTTCAAAAATGTCGACGGGTGCATGTCGGATCCTCCGAAAATAGTGTATTTTTGAAGGATCCGACACGGATGCAACAACATTTTTGGAGAGTCCTAGCAACTTAGATTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A      G   T      T                 C AC G  G A           C        G
 TTTGAA CTA GTTGCT GGACTCTTCAAAAATGT G  G GT C TGTCGGATCCT CGAAAATA 
 |||||| ||| |||||| ||||||||||||||||| |  | || | ||||||||||| |||||||| T
 AAGTTT GAT CAACGA CCTGAGAGGTTTTTACA C  C TA G ACAGCCTAGGA GTTTTTAT 
G      A   T      T                 A AA G  G C           A        G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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