SE3810184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8502
  • Solanum tuberosum
  • SE3810184
  • Tc1/Mariner
  • St6
  • chr05:58430019-58430282
  • TA
  • TACTCCCTCTGTCTCAATTTATGTGACACTTTTCATTTTTCGAGAGTCAAACAATTTAAGTTTGATTGGGAATTTGCGCATGGAATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
        C   C   A                 --      C    G        -    AG        GG     GCG      A   ------------------------    TTTTTTTGAAATGAAATTTATATATTTG
TACTCCCT TGT TCA TTTATGTGACACTTTTC  ATTTTT GAGA TCAAACAA TTTA  TTTGATTG  AATTT   CATGGA TCT                        TCAA                            
|||||||| ||| ||| |||||||||||||||||  |||||| |||| |||||||| ||||  ||||||||  |||||   |||||| |||                        ||||                             
ATGAGGGA GCA AGT AAATACACTGTGAAAAG  TAAAAA CTCT AGTTTGTT AGAT  AAACTGGC  TTAAA   GTATCT AGA                        TTAC                            
        A   A   A                 CT      -    A        C    AG        AT     -AA      -   AAATTTATAAAACATAATAGTTAA    ACTGAATATCATGAAAAATGCATCAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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