Plant MITE

SE3820185

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8503
Solanum tuberosum
SE3820185
Mutator
M6
chr05:11511912-11512227
GATAATATA
ATAATATAGGGAAAAAAGTGTGAAATATATTTAAACTTTGGCCAAAATTGTTGTTACGATACCAAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

G   A   A       A   G     T      A          A                          -GAAA     -                                                 C    A       CATAAA    GCATA
 ATA TAT GGGAAAA AGT TGAAA ATATTT AACTTTGGCC AAATTGTTGTTACGATACCAAATTTT     AGGAC TTTTTACCCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTG CCAC TGGACAT      TATT     
 ||| ||| ||||||| ||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||      ||||     A
 TAT ATA CCCTTTT TCA ACTTT TATGAA TTGAAACCGG TTTAACAACAATGCTATGGTTTGAAA     TCCTG AAAAATGGGGGACGTGATAAATTATCACATAAAATTTCCATATATACAC GGTG ACCTGTG      ATAA     
A   A   G       C   G     T      G          C                          ATACC     G                                                 A    C       -CAATG    ATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820185

GATAATATAGGGAAAAAAGTGTGAAATATATTTAAACTTTGGCCAAAATTGTTGTTACGATACCAAATTTTGAAAAGGACTTTTTACCCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACATGGACATCATAAATATTGCATAATTATAAATAGTAACGTGTCCACGTGGACACATATATACCTTTAAAATACACTATTAAATAGTGCAGGGGGTAAAAAGGTCCTCCATAAAAGTTTGGTATCGTAACAACAATTTCGGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCGATAATATA

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