SE3830187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8505
  • Solanum tuberosum
  • SE3830187
  • hAT
  • Hat24
  • chr08:29209793-29210523
  • GTAATTAG
  • TAATTAGTAGGGGTGTGTATCGGTCGGT

Secondary structure and sequence

TSD    TIR
5'



3'
G      G           ---------          TC       AGTA    CGGTTCAGTTTTTAAATATGCTAAACCGATAACCAAACCAATAAGATATTTGTTATCGATTTTCGGTTTATCGGTTTATCGGTTTTGGTTTTTAATGGTTCGATTTCGGTTTAACCAATAAGAAAATGATTTCAAAACAAATACATGACTTGTCCAACAATTTAATGCGAAATAAAAAAGAGGGAAATCTAATTACTCATTGAGTGCAAAAATTCTGCTTAGTGTAGTAAAAGTATAGCAAATACTCACAATTCACAACCCTAGTCGTTGCCTAATCTTTGCCGTCGTCGTTCTTAGTTCTTTAGGTTTTTGACGTT
 TAATTA TAGGGGTGTGT         ATCGGTCGGT  GGTTTTA    TTAT                                                                                                                                                                                                                                                                                                                             
 |||||| |||||||||||         ||||||||||  |||||||    ||||                                                                                                                                                                                                                                                                                                                             G
 ATTAAT ATCCCCACACG         TGGCTGGCTA  TTGGCTT    GGTT                                                                                                                                                                                                                                                                                                                             
G      G           TTTTTAACT          -T       ----    TTTTTCACAATAACCAAATAACAATAACCCAATAACTCAATTGCCAATAAATTACCAAAATATTTTTTTTTAATAACTCAATAGCCAAGCCATAACCAAAAAATAAAACCCAATAACCCAATTGGCTATTGGGTAATTCTTATATTATTAAATGATAAAAGTAAAAATCAGTATGTATTTATAGTTTGTTTTTTATAATTATATTAGTGATACAATCTGATATTGATATTCCTGGGATGTGTTAATTGTAATGAATTAATTGAGACGAGAGAGGTAAATGGGAAATCTAAAATCATATTGAAATCAGAAATGCAAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End