SE3830191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8509
  • Solanum tuberosum
  • SE3830191
  • hAT
  • Hat29
  • PGSC0003DMB000000733:109216-109480
  • CGTAAAGA
  • CAGAGGCGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CGTAAAGA   A       --------------C    -     TCGAAAATGGGTGCACCAAGTAAAATGTATTGAAGTGAGAATTGATCCTTTAATCCTCAAGGTCAAAAGCTCAACATTTAACCATGTGGACCATTT
        CAG GGCGAAT               TAGG ATTTT                                                                                                
        ||| |||||||               |||| |||||                                                                                                 
        GTC CCGCTTA               TCTC TGGGC                                                                                                
AGAAATGC   A       AATGTCGGTTTTTTA    A     GTGGGCACCAGAGAAGCATTTTAATCTATAAAATATACATATAAAAAATTCTAAAACATATTATAATATAAGAACGTGGGCATGATGTTCTTCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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